Coerce a matrix into a micro_array object.

Coerce a matrix into a micro_array object.

as.micro_array(
  M,
  time,
  subject,
  name_probe = NULL,
  gene_ID = NULL,
  group = 0,
  start_time = 0
)

Arguments

M	A matrix. Contains the microarray measurements. Should be of size N * K, with N the number of genes and K=T*P with T the number of time points, and P the number of subjects. This matrix should be created using cbind(M1,M2,...) with M1 a N*T matrix with the measurements for patient 1, M2 a N*T matrix with the measurements for patient 2.
time	A vector. The time points measurements
subject	The number of subjects.
name_probe	Vector with the row names of the micro array.
gene_ID	Vector with the actors' IDs of the row names of the micro array.
group	Vector with the actors' groups of the row names of the micro array.
start_time	Vector with the actors' starting time (i.e. the time it is thought to begin to have an effect on another actor in the network).

Value

A micro_array object.

Author

Bertrand Frederic, Myriam Maumy-Bertrand.

Examples

if(require(CascadeData)){
  data(micro_US, package="CascadeData")
  micro_US<-as.micro_array(micro_US[1:100,],time=c(60,90,210,390),subject=6)
  plot(micro_US)
  }
#> Le chargement a nécessité le package : CascadeData