R/datasets.R
CLL.RdB-cells were negatively selected from healthy donors and previously untreated CLL patients. BCR stimulated and unstimulated control B-cells were treated at four time points after stimulation for total RNA extraction and hybridization on Affymetrix microarrays.
The format is: chr "CLL"
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39411
The dataset provided with package is the first five lines of the full dataset. The full dataset can be downloaded from the github repository of the package (https://raw.githubusercontent.com/fbertran/Patterns/master/add_data/CLL.RData).
Three different cell populations (6 healthy B-lymphocytes, 6 leukemic CLL B-lymphocyte of indolent form and 5 leukemic CLL B-lymphocyte of aggressive form) were stimulated in vitro with an anti-IgM antibody, activating the B-cell receptor (BCR). We analyzed the gene expression at 4 time points (60, 90, 210 and 390 minutes). Each gene expression measurement is performed both in stimulated cells and in control unstimulated cells. For one aggressive CLL case, we silenced expression of DUSP1 by transfecting DUSP1-specific RNAi and, as a control, transfected cells with a non-targeting RNAi. We then stimulated the BCR of these cells and analyzed the gene expression at the same time points in stimulated cells and in control unstimulated cells.
Vallat, L., Kemper, C. A., Jung, N., Maumy-Bertrand, M., Bertrand, F., Meyer, N., … Bahram, S. (2013). Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences of the United States of America, 110(2), 459–464.
data(CLL)
str(CLL)
#> 'data.frame': 6 obs. of 154 variables:
#> $ probeset : chr "1007_s_at" "1053_at" "117_at" "121_at" ...
#> $ nom : chr "DDR1 or MIR4640" "RFC2" "HSPA6" "PAX8" ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.60min : num 561 221 270 678 142 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.90min : num 557 216 263 598 136 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.210min : num 561 229 244 618 145 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.390min : num 647 224 252 716 135 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.60min : num 566 217 279 659 144 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.90min : num 584 203 246 625 126 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.210min : num 522 210 241 590 140 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.390min : num 561 210 241 676 138 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.60min : num 458 216 259 516 136 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.90min : num 570 224 264 636 137 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.210min : num 573 216 255 574 141 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.390min : num 583 224 253 612 122 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.60min : num 602 229 294 686 149 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.90min : num 539 224 290 670 139 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.210min : num 531 220 261 585 140 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.390min : num 570 219 250 568 128 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.60min : num 560 250 250 609 149 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.90min : num 632 240 245 657 146 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.210min : num 651 248 255 723 128 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.390min : num 626 235 240 677 140 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.60min : num 555 251 252 620 139 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.90min : num 605 247 242 715 127 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.210min : num 449 227 236 479 124 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.390min : num 543 229 242 683 134 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.60min : num 589 255 257 688 147 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.90min : num 614 244 243 607 137 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.210min : num 611 238 253 691 138 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.390min : num 601 252 270 711 133 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.60min : num 586 255 253 637 142 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.90min : num 582 230 240 672 137 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.210min : num 537 236 255 675 140 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.390min : num 574 240 257 656 141 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.60min : num 525 241 268 629 149 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.90min : num 560 240 284 710 154 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.210min : num 604 255 256 673 141 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.390min : num 568 235 258 642 131 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.60min : num 560 250 272 699 150 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.90min : num 549 226 259 687 140 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.210min : num 563 231 280 683 146 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.390min : num 592 248 264 741 157 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.60min : num 627 243 268 680 140 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.90min : num 620 237 278 729 139 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.210min : num 619 233 264 689 142 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.390min : num 553 240 265 749 144 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.60min : num 576 251 279 678 142 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.90min : num 584 227 287 691 154 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.210min : num 593 225 268 719 148 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.390min : num 567 230 243 644 139 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.60min_.ind. : num 648 200 232 629 143 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.90min_.ind. : num 674 217 256 767 154 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.210min_.ind. : num 639 216 240 707 137 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.390min_.ind. : num 598 215 235 661 148 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.60min_.ind. : num 609 201 234 724 138 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.90min_.ind. : num 622 208 236 750 144 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.210min_.ind. : num 598 193 231 721 145 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.390min_.ind. : num 674 203 228 696 144 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.60min_.ind. : num 613 202 256 694 200 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.90min_.ind. : num 533 204 275 641 152 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.210min_.ind. : num 586 194 269 616 148 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.390min_.ind. : num 668 229 322 841 155 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.60min_.ind. : num 560 201 225 676 153 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.90min_.ind. : num 624 200 262 661 142 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.210min_.ind. : num 542 229 318 703 153 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.390min_.ind. : num 645 210 291 812 152 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.60min_.ind. : num 525 205 261 679 146 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.90min_.ind. : num 619 207 279 791 142 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.210min_.ind. : num 575 224 270 802 146 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.390min_.ind. : num 536 201 272 625 140 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.60min_.ind. : num 605 206 292 829 148 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.90min_.ind. : num 542 191 255 698 143 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.210min_.ind. : num 510 200 267 692 145 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.390min_.ind. : num 584 234 263 689 143 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.60min_.ind. : num 542 209 268 682 159 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.90min_.ind. : num 552 208 246 618 139 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.210min_.ind. : num 636 198 239 692 138 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.390min_.ind. : num 604 204 231 603 144 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.60min_.ind. : num 567 199 277 686 139 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.90min_.ind. : num 573 205 234 593 141 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.210min_.ind. : num 652 203 234 577 147 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.390min_.ind. : num 506 197 252 598 141 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.60min_.ind. : num 584 202 229 751 134 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.90min_.ind. : num 561 197 230 778 128 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.210min_.ind. : num 570 210 235 713 128 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.390min_.ind. : num 595 210 228 647 126 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.60min_.ind. : num 528 187 218 591 134 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.90min_.ind. : num 527 195 217 614 126 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.210min_.ind. : num 653 216 220 737 130 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.390min_.ind. : num 459 211 206 606 140 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.60min_.ind. : num 503 202 276 621 134 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.90min_.ind. : num 595 207 303 803 141 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.210min_.ind. : num 632 200 265 741 143 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.390min_.ind. : num 740 201 269 813 141 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.60min_.ind. : num 493 192 301 677 132 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.90min_.ind. : num 671 209 269 708 137 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.210min_.ind. : num 721 213 259 848 143 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.390min_.ind. : num 658 206 293 725 134 ...
#> $ CLL.B.cell..patient.M2_unstimulated.cells_at.60min_.agg. : num 701 216 733 790 143 ...
#> [list output truncated]
# \donttest{
CLLfile <- "https://github.com/fbertran/Patterns/raw/master/add_data/CLL.RData"
repmis::source_data(CLLfile)
#> Downloading data from: https://github.com/fbertran/Patterns/raw/master/add_data/CLL.RData
#> SHA-1 hash of the downloaded data file is:
#> 8dca428b86d460cd2018745029f03bc12aa8be65
#> [1] "CLL"
str(CLL)
#> 'data.frame': 54675 obs. of 154 variables:
#> $ probeset : chr "1007_s_at" "1053_at" "117_at" "121_at" ...
#> $ nom : chr "DDR1 or MIR4640" "RFC2" "HSPA6" "PAX8" ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.60min : num 561 221 270 678 142 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.90min : num 557 216 263 598 136 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.210min : num 561 229 244 618 145 ...
#> $ Healthy.B.cell..subject.N1_unstimulated.cells_at.390min : num 647 224 252 716 135 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.60min : num 566 217 279 659 144 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.90min : num 584 203 246 625 126 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.210min : num 522 210 241 590 140 ...
#> $ Healthy.B.cell..subject.N1_stimulated.cells_at.390min : num 561 210 241 676 138 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.60min : num 458 216 259 516 136 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.90min : num 570 224 264 636 137 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.210min : num 573 216 255 574 141 ...
#> $ Healthy.B.cell..subject.N2_unstimulated.cells_at.390min : num 583 224 253 612 122 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.60min : num 602 229 294 686 149 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.90min : num 539 224 290 670 139 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.210min : num 531 220 261 585 140 ...
#> $ Healthy.B.cell..subject.N2_stimulated.cells_at.390min : num 570 219 250 568 128 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.60min : num 560 250 250 609 149 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.90min : num 632 240 245 657 146 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.210min : num 651 248 255 723 128 ...
#> $ Healthy.B.cell..subject.N3_unstimulated.cells_at.390min : num 626 235 240 677 140 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.60min : num 555 251 252 620 139 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.90min : num 605 247 242 715 127 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.210min : num 449 227 236 479 124 ...
#> $ Healthy.B.cell..subject.N3_stimulated.cells_at.390min : num 543 229 242 683 134 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.60min : num 589 255 257 688 147 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.90min : num 614 244 243 607 137 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.210min : num 611 238 253 691 138 ...
#> $ Healthy.B.cell..subject.N4_unstimulated.cells_at.390min : num 601 252 270 711 133 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.60min : num 586 255 253 637 142 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.90min : num 582 230 240 672 137 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.210min : num 537 236 255 675 140 ...
#> $ Healthy.B.cell..subject.N4_stimulated.cells_at.390min : num 574 240 257 656 141 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.60min : num 525 241 268 629 149 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.90min : num 560 240 284 710 154 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.210min : num 604 255 256 673 141 ...
#> $ Healthy.B.cell..subject.N5_unstimulated.cells_at.390min : num 568 235 258 642 131 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.60min : num 560 250 272 699 150 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.90min : num 549 226 259 687 140 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.210min : num 563 231 280 683 146 ...
#> $ Healthy.B.cell..subject.N5_stimulated.cells_at.390min : num 592 248 264 741 157 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.60min : num 627 243 268 680 140 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.90min : num 620 237 278 729 139 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.210min : num 619 233 264 689 142 ...
#> $ Healthy.B.cell..subject.N6_unstimulated.cells_at.390min : num 553 240 265 749 144 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.60min : num 576 251 279 678 142 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.90min : num 584 227 287 691 154 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.210min : num 593 225 268 719 148 ...
#> $ Healthy.B.cell..subject.N6_stimulated.cells_at.390min : num 567 230 243 644 139 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.60min_.ind. : num 648 200 232 629 143 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.90min_.ind. : num 674 217 256 767 154 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.210min_.ind. : num 639 216 240 707 137 ...
#> $ CLL.B.cell..patient.M1_unstimulated.cells_at.390min_.ind. : num 598 215 235 661 148 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.60min_.ind. : num 609 201 234 724 138 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.90min_.ind. : num 622 208 236 750 144 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.210min_.ind. : num 598 193 231 721 145 ...
#> $ CLL.B.cell..patient.M1_stimulated.cells_at.390min_.ind. : num 674 203 228 696 144 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.60min_.ind. : num 613 202 256 694 200 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.90min_.ind. : num 533 204 275 641 152 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.210min_.ind. : num 586 194 269 616 148 ...
#> $ CLL.B.cell..patient.M4_unstimulated.cells_at.390min_.ind. : num 668 229 322 841 155 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.60min_.ind. : num 560 201 225 676 153 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.90min_.ind. : num 624 200 262 661 142 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.210min_.ind. : num 542 229 318 703 153 ...
#> $ CLL.B.cell..patient.M4_stimulated.cells_at.390min_.ind. : num 645 210 291 812 152 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.60min_.ind. : num 525 205 261 679 146 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.90min_.ind. : num 619 207 279 791 142 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.210min_.ind. : num 575 224 270 802 146 ...
#> $ CLL.B.cell..patient.M5_unstimulated.cells_at.390min_.ind. : num 536 201 272 625 140 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.60min_.ind. : num 605 206 292 829 148 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.90min_.ind. : num 542 191 255 698 143 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.210min_.ind. : num 510 200 267 692 145 ...
#> $ CLL.B.cell..patient.M5_stimulated.cells_at.390min_.ind. : num 584 234 263 689 143 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.60min_.ind. : num 542 209 268 682 159 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.90min_.ind. : num 552 208 246 618 139 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.210min_.ind. : num 636 198 239 692 138 ...
#> $ CLL.B.cell..patient.M6_unstimulated.cells_at.390min_.ind. : num 604 204 231 603 144 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.60min_.ind. : num 567 199 277 686 139 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.90min_.ind. : num 573 205 234 593 141 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.210min_.ind. : num 652 203 234 577 147 ...
#> $ CLL.B.cell..patient.M6_stimulated.cells_at.390min_.ind. : num 506 197 252 598 141 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.60min_.ind. : num 584 202 229 751 134 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.90min_.ind. : num 561 197 230 778 128 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.210min_.ind. : num 570 210 235 713 128 ...
#> $ CLL.B.cell..patient.M7_unstimulated.cells_at.390min_.ind. : num 595 210 228 647 126 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.60min_.ind. : num 528 187 218 591 134 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.90min_.ind. : num 527 195 217 614 126 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.210min_.ind. : num 653 216 220 737 130 ...
#> $ CLL.B.cell..patient.M7_stimulated.cells_at.390min_.ind. : num 459 211 206 606 140 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.60min_.ind. : num 503 202 276 621 134 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.90min_.ind. : num 595 207 303 803 141 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.210min_.ind. : num 632 200 265 741 143 ...
#> $ CLL.B.cell..patient.M8_unstimulated.cells_at.390min_.ind. : num 740 201 269 813 141 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.60min_.ind. : num 493 192 301 677 132 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.90min_.ind. : num 671 209 269 708 137 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.210min_.ind. : num 721 213 259 848 143 ...
#> $ CLL.B.cell..patient.M8_stimulated.cells_at.390min_.ind. : num 658 206 293 725 134 ...
#> $ CLL.B.cell..patient.M2_unstimulated.cells_at.60min_.agg. : num 701 216 733 790 143 ...
#> [list output truncated]
# }