Retrieve human transcription factors from HumanTFDB, extracted from AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. Hui Hu, Ya-Ru Miao, Long-Hao Jia, Qing-Yang Yu, Qiong Zhang and An-Yuan Guo. *Nucl. Acids Res*. (2018).

Author

Bertrand Frederic, Myriam Maumy-Bertrand.

Examples


data(doc)
head(doc)
#>        Species  Symbol         Ensembl   Family
#> 1 Homo_sapiens  ZBTB8B ENSG00000273274     ZBTB
#> 2 Homo_sapiens    GSX2 ENSG00000180613 Homeobox
#> 3 Homo_sapiens    TBX2 ENSG00000121068    T-box
#> 4 Homo_sapiens    PAX8 ENSG00000125618      PAX
#> 5 Homo_sapiens CREB3L1 ENSG00000157613  TF_bZIP
#> 6 Homo_sapiens  NKX6-1 ENSG00000163623 Homeobox
#>                                                                            Protein
#> 1                                                 ENSP00000476499;ENSP00000476499;
#> 2                                                 ENSP00000319118;ENSP00000483522;
#> 3                                                 ENSP00000404781;ENSP00000240328;
#> 4 ENSP00000395498;ENSP00000263335;ENSP00000380768;ENSP00000263334;ENSP00000314750;
#> 5                                                 ENSP00000481956;ENSP00000436574;
#> 6                                                 ENSP00000295886;ENSP00000449761;
#>   Entrez.ID
#> 1    728116
#> 2    170825
#> 3      6909
#> 4      7849
#> 5     90993
#> 6      4825
summary(doc)
#>    Species             Symbol            Ensembl             Family         
#>  Length:1665        Length:1665        Length:1665        Length:1665       
#>  Class :character   Class :character   Class :character   Class :character  
#>  Mode  :character   Mode  :character   Mode  :character   Mode  :character  
#>    Protein           Entrez.ID        
#>  Length:1665        Length:1665       
#>  Class :character   Class :character  
#>  Mode  :character   Mode  :character