Fix to methods as requested by CRAN and remove escaped latex characters.

Fixes requested by CRAN.

  • Added functions for raw bootstrap. Added feature to support custom bootstrap function.
  • Github actions and Roxygen most of the package.
  • Rewrote examples to cope with pkgdown requirements.
  • Improve examples in manual
  • Bug fix in signpred if no variable was selected.
  • Creating website for the package
  • Github repository of the package is now public
  • Added a NEWS.md file to track changes to the package.
  • Complete S3 methods to pass CRAN checks.
  • Sped up examples to pass CRAN checks.
  • Updated code to pass CRAN checks.
  • Added naive AIC and BIC output for data with missing values.
  • donttest update requested by CRAN.
  • Verbose option (request from Max Kuhn, caret package).
  • Fix for sPLS like option.
  • Major upgrade to enhance generics support. Package vignette (130 p.) release. Help of package completed.
  • Tilted bootstrap and demos fixed.
  • Code upgrade requested by R Core Team due to change in namespace policies.
  • Improvement of access to T-np or model based Bootstrap.
  • Graphical assessment of variable selection. Selection of bootstap techniques for CI plots.
  • Improved bootstrap stability.
  • polr demo fixed.
  • Minor code enhancements.
  • Minor code enhancements.
  • Demos fixed.
  • Minor code enhancements.
  • Minor code enhancements.
  • Minor code fixes.
  • Cross-validation fully compatible with weighted plsR or plsRglm models.
  • Minor code changes.
  • Estimation of Degrees of Freedom for plsR models.
  • Weighted plsR models.
  • Sparse option to set to 0 the coefficients of non-significant predictors and to select the number of components.
  • Minor fixes to cope with upcoming changes in R 2.13.
  • Support for logistic, probit, cloglog and cauchit links for cumulative link models.
  • Support for various glm or polr options.
  • Support for formulas.
  • Minor code changes.
  • Support for R or user defined “family” definition of glms added.
  • Support for Gamma(link = “inverse”), inverse.gaussian(link = “1/mu^2”) and poisson(link = “log”) added.
  • Minor code fixes.
  • Boostrap functionnalities improvement. Bootstrap no longer stops if model fitting fails for some subsample.
  • Support for polr, crossvalidations and bootstraps.
  • Creating help files.