All functions

AICpls()

AIC function for plsR models

CorMat

Correlation matrix for simulating plsR datasets

Cornell

Cornell dataset

PLS_glm_wvc()

Light version of PLS_glm for cross validation purposes

PLS_lm_wvc()

Light version of PLS_lm for cross validation purposes

XbordeauxNA

Incomplete dataset for the quality of wine dataset

XpineNAX21

Incomplete dataset from the pine caterpillars example

aic.dof() bic.dof() gmdl.dof()

Akaike and Bayesian Information Criteria and Generalized minimum description length

aze

Microsatellites Dataset

aze_compl

As aze without missing values

bootpls()

Non-parametric Bootstrap for PLS models

bootplsglm()

Non-parametric Bootstrap for PLS generalized linear models

bordeaux

Quality of wine dataset

bordeauxNA

Quality of wine dataset

boxplots.bootpls()

Boxplot bootstrap distributions

coef(<plsRglmmodel>)

coef method for plsR models

coef(<plsRmodel>)

coef method for plsR models

coefs.plsR()

Coefficients for bootstrap computations of PLSR models

coefs.plsR.raw()

Raw coefficients for bootstrap computations of PLSR models

coefs.plsRglm()

Coefficients for bootstrap computations of PLSGLR models

coefs.plsRglm.raw()

Raw coefficients for bootstrap computations of PLSGLR models

coefs.plsRglmnp()

Coefficients for bootstrap computations of PLSGLR models

coefs.plsRnp()

Coefficients for bootstrap computations of PLSR models

confints.bootpls()

Bootstrap confidence intervals

cv.plsR() cv.plsRmodel(<default>) cv.plsRmodel(<formula>) PLS_lm_kfoldcv() PLS_lm_kfoldcv_formula()

Partial least squares regression models with k-fold cross-validation

cv.plsRglm() cv.plsRglmmodel(<default>) cv.plsRglmmodel(<formula>) PLS_glm_kfoldcv() PLS_glm_kfoldcv_formula()

Partial least squares regression glm models with k-fold cross validation

cvtable()

Table method for summary of cross validated PLSR and PLSGLR models

dicho()

Dichotomization

fowlkes

Fowlkes dataset

infcrit.dof()

Information criteria

kfolds2CVinfos_glm()

Extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares glm models

kfolds2CVinfos_lm()

Extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models

kfolds2Chisq()

Computes Predicted Chisquare for k-fold cross-validated partial least squares regression models.

kfolds2Chisqind()

Computes individual Predicted Chisquare for k-fold cross validated partial least squares regression models.

kfolds2Mclassed()

Number of missclassified individuals for k-fold cross validated partial least squares regression models.

kfolds2Mclassedind()

Number of missclassified individuals per group for k-fold cross validated partial least squares regression models.

kfolds2Press()

Computes PRESS for k-fold cross validated partial least squares regression models.

kfolds2Pressind()

Computes individual PRESS for k-fold cross validated partial least squares regression models.

kfolds2coeff()

Extracts coefficients from k-fold cross validated partial least squares regression models

loglikpls()

loglikelihood function for plsR models

permcoefs.plsR()

Coefficients for permutation bootstrap computations of PLSR models

permcoefs.plsR.raw()

Raw coefficients for permutation bootstrap computations of PLSR models

permcoefs.plsRglm()

Coefficients for permutation bootstrap computations of PLSGLR models

permcoefs.plsRglm.raw()

Raw coefficients for permutation bootstrap computations of PLSGLR models

permcoefs.plsRglmnp()

Coefficients for permutation bootstrap computations of PLSGLR models

permcoefs.plsRnp()

Coefficients computation for permutation bootstrap

pine

Pine dataset

pineNAX21

Incomplete dataset from the pine caterpillars example

pine_full

Complete Pine dataset

pine_sup

Complete Pine dataset

plot(<table.summary.cv.plsRglmmodel>)

Plot method for table of summary of cross validated plsRglm models

plot(<table.summary.cv.plsRmodel>)

Plot method for table of summary of cross validated plsR models

plots.confints.bootpls()

Plot bootstrap confidence intervals

plsR() plsRmodel(<default>) plsRmodel(<formula>) PLS_lm() PLS_lm_formula()

Partial least squares Regression models with leave one out cross validation

plsR(<dof>)

Computation of the Degrees of Freedom

plsRglm-package

plsRglm-package

plsRglm() plsRglmmodel(<default>) plsRglmmodel(<formula>) PLS_glm() PLS_glm_formula()

Partial least squares Regression generalized linear models

predict(<plsRglmmodel>)

Print method for plsRglm models

predict(<plsRmodel>)

Print method for plsR models

print(<coef.plsRglmmodel>)

Print method for plsRglm models

print(<coef.plsRmodel>)

Print method for plsR models

print(<cv.plsRglmmodel>)

Print method for plsRglm models

print(<cv.plsRmodel>)

Print method for plsR models

print(<plsRglmmodel>)

Print method for plsRglm models

print(<plsRmodel>)

Print method for plsR models

print(<summary.plsRglmmodel>)

Print method for summaries of plsRglm models

print(<summary.plsRmodel>)

Print method for summaries of plsR models

signpred()

Graphical assessment of the stability of selected variables

simul_data_UniYX()

Data generating function for univariate plsR models

simul_data_UniYX_binom()

Data generating function for univariate binomial plsR models

simul_data_YX()

Data generating function for multivariate plsR models

simul_data_complete()

Data generating detailed process for multivariate plsR models

summary(<cv.plsRglmmodel>)

Summary method for plsRglm models

summary(<cv.plsRmodel>)

Summary method for plsR models

summary(<plsRglmmodel>)

Summary method for plsRglm models

summary(<plsRmodel>)

Summary method for plsR models

tilt.bootpls()

Non-parametric tilted bootstrap for PLS regression models

tilt.bootplsglm()

Non-parametric tilted bootstrap for PLS generalized linear regression models