Extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models
Source:R/kfolds2CVinfos_lm.R
kfolds2CVinfos_lm.RdThis function extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models for both formula or classic specifications of the model.
Arguments
- pls_kfolds
an object computed using
PLS_lm_kfoldcv- MClassed
should number of miss classed be computed
- verbose
should infos be displayed ?
Value
- list
table of fit statistics for first group partition
- list()
...
- list
table of fit statistics for last group partition
References
Nicolas Meyer, Myriam Maumy-Bertrand et Frédéric Bertrand (2010). Comparing the linear and the logistic PLS regression with qualitative predictors: application to allelotyping data. Journal de la Societe Francaise de Statistique, 151(2), pages 1-18. https://www.numdam.org/item/JSFS_2010__151_2_1_0/
See also
kfolds2coeff, kfolds2Pressind,
kfolds2Press, kfolds2Mclassedind and
kfolds2Mclassed to extract and transforms results from k-fold
cross-validation.
Author
Frédéric Bertrand
frederic.bertrand@lecnam.net
https://fbertran.github.io/homepage/
Examples
# \donttest{
data(Cornell)
summary(cv.plsR(Y~.,data=Cornell,nt=10,K=6,verbose=FALSE))
#> ____************************************************____
#> ____Component____ 1 ____
#> ____Component____ 2 ____
#> ____Component____ 3 ____
#> ____Component____ 4 ____
#> ____Component____ 5 ____
#> ____Component____ 6 ____
#> ____Predicting X without NA neither in X nor in Y____
#> ****________________________________________________****
#>
#>
#> NK: 1
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y
#> Nb_Comp_0 82.01205 NA NA NA NA 467.796667 NA
#> Nb_Comp_1 53.15173 0.8519520 0.0975 0.851952 69.25638 35.742486 0.9235940
#> Nb_Comp_2 41.08283 0.8116966 0.0975 -0.271907 45.46112 11.066606 0.9763431
#> Nb_Comp_3 32.06411 0.5620698 0.0975 -1.325664 25.73720 4.418081 0.9905556
#> Nb_Comp_4 33.76477 -2.5555677 0.0975 -7.119027 35.87052 4.309235 0.9907882
#> Nb_Comp_5 33.34373 -27.5253750 0.0975 -7.022734 34.57185 3.521924 0.9924713
#> Nb_Comp_6 35.25533 NA 0.0975 NA NA 3.496074 0.9925265
#> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 37.010388 1.000000 6.5212706 46.0708838 47.7893514 27.59461
#> Nb_Comp_1 8.150064 2.740749 1.8665281 4.5699686 4.9558156 21.34020
#> Nb_Comp_2 -3.918831 5.085967 1.1825195 2.1075461 2.3949331 27.40202
#> Nb_Comp_3 -12.937550 5.121086 0.7488308 0.8467795 0.9628191 24.40842
#> Nb_Comp_4 -11.236891 5.103312 0.7387162 0.8232505 0.9357846 24.23105
#> Nb_Comp_5 -11.657929 6.006316 0.7096382 0.7976101 0.9198348 28.21184
#> Nb_Comp_6 -9.746328 7.000001 0.7633342 0.9711319 1.1359499 33.18347
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 6.5212706 46.0708838 47.7893514 27.59461
#> Nb_Comp_1 2 1.8905683 4.1699567 4.4588195 18.37545
#> Nb_Comp_2 3 1.1088836 1.5370286 1.6860917 17.71117
#> Nb_Comp_3 4 0.7431421 0.7363469 0.8256118 19.01033
#> Nb_Comp_4 5 0.7846050 0.8721072 0.9964867 24.16510
#> Nb_Comp_5 6 0.7661509 0.8804809 1.0227979 28.64206
#> Nb_Comp_6 7 0.8361907 1.1070902 1.3048716 33.63927
#> attr(,"computed_nt")
#> [1] 6
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(pine)
summary(cv.plsR(x11~.,data=pine,nt=10,NK=3,verbose=FALSE),verbose=FALSE)
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.61896 0.40418742 0.0975 0.4041874 12.39299 11.074659
#> Nb_Comp_2 58.47638 0.33193392 0.0975 -0.1212688 12.41767 8.919303
#> Nb_Comp_3 56.55421 0.03276264 0.0975 -0.4478169 12.91352 7.919786
#> Nb_Comp_4 54.35053 -0.49824723 0.0975 -0.5489964 12.26772 6.972542
#> Nb_Comp_5 55.99834 -1.71552715 0.0975 -0.8124693 12.63752 6.898523
#> Nb_Comp_6 57.69592 -4.14934105 0.0975 -0.8962584 13.08138 6.835594
#> Nb_Comp_7 59.37953 -9.62943751 0.0975 -1.0642326 14.11026 6.770369
#> Nb_Comp_8 61.21213 -21.05361351 0.0975 -1.0747677 14.04694 6.736112
#> Nb_Comp_9 63.18426 -46.06101653 0.0975 -1.1339368 14.37444 6.730426
#> Nb_Comp_10 65.15982 -102.26235038 0.0975 -1.1942227 14.76805 6.725443
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof
#> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787
#> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153
#> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090
#> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535
#> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689
#> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912
#> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121
#> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445
#> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783
#> Nb_Comp_9 0.6764242 77.39986 10.732146 0.5378276 0.3920957 0.5328746
#> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065
#> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 -5.600237 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[2]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.61896 0.3530191 0.0975 0.35301905 13.45730 11.074659
#> Nb_Comp_2 58.47638 0.3264710 0.0975 -0.04103368 11.52909 8.919303
#> Nb_Comp_3 56.55421 0.1686448 0.0975 -0.23432733 11.00934 7.919786
#> Nb_Comp_4 54.35053 -0.1370542 0.0975 -0.36771171 10.83198 6.972542
#> Nb_Comp_5 55.99834 -0.7283234 0.0975 -0.52000082 10.59827 6.898523
#> Nb_Comp_6 57.69592 -1.9563661 0.0975 -0.71053990 11.80020 6.835594
#> Nb_Comp_7 59.37953 -4.4934253 0.0975 -0.85816814 12.70168 6.770369
#> Nb_Comp_8 61.21213 -9.1146498 0.0975 -0.84122824 12.46579 6.736112
#> Nb_Comp_9 63.18426 -21.3247736 0.0975 -1.20717218 14.86776 6.730426
#> Nb_Comp_10 65.15982 -50.9708963 0.0975 -1.32794730 15.66808 6.725443
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof
#> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787
#> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153
#> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090
#> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535
#> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689
#> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912
#> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121
#> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445
#> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783
#> Nb_Comp_9 0.6764242 77.39986 10.732146 0.5378276 0.3920957 0.5328746
#> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065
#> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 -5.600237 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[3]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.61896 0.27325368 0.0975 0.2732537 15.11643 11.074659
#> Nb_Comp_2 58.47638 0.05720826 0.0975 -0.2972776 14.36691 8.919303
#> Nb_Comp_3 56.55421 -0.64711661 0.0975 -0.7470631 15.58258 7.919786
#> Nb_Comp_4 54.35053 -2.12708354 0.0975 -0.8985198 15.03587 6.972542
#> Nb_Comp_5 55.99834 -5.78392162 0.0975 -1.1694085 15.12629 6.898523
#> Nb_Comp_6 57.69592 -13.77626131 0.0975 -1.1781297 15.02588 6.835594
#> Nb_Comp_7 59.37953 -33.32015187 0.0975 -1.3226546 15.87672 6.770369
#> Nb_Comp_8 61.21213 -80.02191131 0.0975 -1.3607679 15.98327 6.736112
#> Nb_Comp_9 63.18426 -193.57847082 0.0975 -1.4015537 16.17713 6.730426
#> Nb_Comp_10 65.15982 -481.05433452 0.0975 -1.4774289 16.67415 6.725443
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof
#> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787
#> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153
#> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090
#> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535
#> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689
#> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912
#> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121
#> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445
#> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783
#> Nb_Comp_9 0.6764242 77.39986 10.732146 0.5378276 0.3920957 0.5328746
#> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065
#> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 -5.600237 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(pineNAX21)
summary(cv.plsR(x11~.,data=pineNAX21,nt=10,NK=3,
verbose=FALSE),verbose=FALSE)
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.69250 0.2942436 0.0975 0.2942436 14.67984 11.099368
#> Nb_Comp_2 58.35228 0.0716092 0.0975 -0.3154551 14.60072 8.885823
#> Nb_Comp_3 56.36553 -0.5380093 0.0975 -0.6566399 14.72061 7.874634
#> Nb_Comp_4 54.02416 -1.7052155 0.0975 -0.7589072 13.85075 6.903925
#> Nb_Comp_5 55.80450 -3.8193757 0.0975 -0.7815127 12.29943 6.858120
#> Nb_Comp_6 57.45753 -7.8982861 0.0975 -0.8463566 12.66254 6.786392
#> Nb_Comp_7 58.73951 -102.7525320 0.0975 -10.6598332 79.12819 6.640327
#> Nb_Comp_8 60.61227 -177.7431389 0.0975 -0.7227834 11.43985 6.614773
#> Nb_Comp_9 62.25948 -505.2225209 0.0975 -1.8321228 18.73385 6.544432
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 NA 96.63448 NA NA NA NA NA
#> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA
#> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA
#> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA
#> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA
#> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA
#> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA
#> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA
#> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA
#> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> [[2]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.69250 2.655287e-01 0.0975 0.2655287 15.27711 11.099368
#> Nb_Comp_2 58.35228 2.373341e-02 0.0975 -0.3292100 14.75339 8.885823
#> Nb_Comp_3 56.36553 -6.672436e-01 0.0975 -0.7077750 15.17499 7.874634
#> Nb_Comp_4 54.02416 -2.354612e+00 0.0975 -1.0120706 15.84432 6.903925
#> Nb_Comp_5 55.80450 -5.192725e+00 0.0975 -0.8460333 12.74487 6.858120
#> Nb_Comp_6 57.45753 -1.329328e+01 0.0975 -1.3080766 15.82907 6.786392
#> Nb_Comp_7 58.73951 -9.615451e+01 0.0975 -5.7972139 46.12856 6.640327
#> Nb_Comp_8 60.61227 -3.484028e+02 0.0975 -2.5963624 23.88102 6.614773
#> Nb_Comp_9 62.25948 -1.209162e+03 0.0975 -2.4635163 22.91037 6.544432
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 NA 96.63448 NA NA NA NA NA
#> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA
#> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA
#> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA
#> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA
#> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA
#> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA
#> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA
#> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA
#> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> [[3]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.69250 3.331660e-01 0.0975 0.3331660 13.87025 11.099368
#> Nb_Comp_2 58.35228 6.088959e-02 0.0975 -0.4083122 15.63138 8.885823
#> Nb_Comp_3 56.36553 -9.486122e-01 0.0975 -1.0749554 18.43769 7.874634
#> Nb_Comp_4 54.02416 -3.096530e+00 0.0975 -1.1022805 16.55469 6.903925
#> Nb_Comp_5 55.80450 -1.552594e+01 0.0975 -3.0341307 27.85133 6.858120
#> Nb_Comp_6 57.45753 -5.855316e+01 0.0975 -2.6036179 24.71404 6.786392
#> Nb_Comp_7 58.73951 -2.331510e+02 0.0975 -2.9317991 26.68273 6.640327
#> Nb_Comp_8 60.61227 -5.147180e+02 0.0975 -1.2025015 14.62533 6.614773
#> Nb_Comp_9 62.25948 -1.271335e+03 0.0975 -1.4671131 16.31939 6.544432
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 NA 96.63448 NA NA NA NA NA
#> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA
#> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA
#> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA
#> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA
#> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA
#> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA
#> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA
#> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA
#> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(aze_compl)
summary(cv.plsR(y~.,data=aze_compl,nt=10,K=8,NK=3,
verbose=FALSE),MClassed=TRUE,verbose=FALSE)
#> [[1]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA NA
#> Nb_Comp_1 126.4083 27 47 -0.1647434 0.0975 -0.1647434
#> Nb_Comp_2 119.3375 25 47 -0.8822439 0.0975 -0.6160160
#> Nb_Comp_3 114.2313 27 47 -2.3852200 0.0975 -0.7985023
#> Nb_Comp_4 112.3463 23 50 -6.3321174 0.0975 -1.1659205
#> Nb_Comp_5 113.2362 22 47 -15.4256691 0.0975 -1.2402354
#> Nb_Comp_6 114.7620 21 49 -36.5043152 0.0975 -1.2832747
#> Nb_Comp_7 116.5264 20 48 -84.7618135 0.0975 -1.2867186
#> Nb_Comp_8 118.4601 20 47 -195.7083439 0.0975 -1.2936589
#> Nb_Comp_9 120.4452 19 47 -448.6419012 0.0975 -1.2858303
#> Nb_Comp_10 122.4395 19 47 -1026.6364377 0.0975 -1.2854552
#> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof
#> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061
#> Nb_Comp_1 30.18253 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114
#> Nb_Comp_2 31.31978 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950
#> Nb_Comp_3 31.94516 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572
#> Nb_Comp_4 35.93037 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285
#> Nb_Comp_5 35.80054 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347
#> Nb_Comp_6 36.10095 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804
#> Nb_Comp_7 35.99089 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976
#> Nb_Comp_8 36.01846 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217
#> Nb_Comp_9 35.87264 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815
#> Nb_Comp_10 35.86160 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632
#> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive
#> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032
#> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251
#> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501
#> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422
#> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041
#> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588
#> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601
#> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352
#> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936
#> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232
#> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468
#> GMDL.naive
#> Nb_Comp_0 -67.17645
#> Nb_Comp_1 -79.67755
#> Nb_Comp_2 -81.93501
#> Nb_Comp_3 -83.31503
#> Nb_Comp_4 -83.23369
#> Nb_Comp_5 -81.93513
#> Nb_Comp_6 -80.42345
#> Nb_Comp_7 -78.87607
#> Nb_Comp_8 -77.31942
#> Nb_Comp_9 -75.80069
#> Nb_Comp_10 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[2]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA NA
#> Nb_Comp_1 126.4083 27 42 -0.1171446 0.0975 -0.1171446
#> Nb_Comp_2 119.3375 25 45 -0.7467203 0.0975 -0.5635579
#> Nb_Comp_3 114.2313 27 43 -2.1919948 0.0975 -0.8274218
#> Nb_Comp_4 112.3463 23 47 -5.4824416 0.0975 -1.0308434
#> Nb_Comp_5 113.2362 22 46 -12.6136137 0.0975 -1.1000750
#> Nb_Comp_6 114.7620 21 48 -27.7014965 0.0975 -1.1082937
#> Nb_Comp_7 116.5264 20 47 -59.6778836 0.0975 -1.1141017
#> Nb_Comp_8 118.4601 20 47 -128.5070391 0.0975 -1.1343368
#> Nb_Comp_9 120.4452 19 47 -276.3780478 0.0975 -1.1417990
#> Nb_Comp_10 122.4395 19 48 -593.6802226 0.0975 -1.1439340
#> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof
#> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061
#> Nb_Comp_1 28.94908 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114
#> Nb_Comp_2 30.30310 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950
#> Nb_Comp_3 32.45883 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572
#> Nb_Comp_4 33.68958 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285
#> Nb_Comp_5 33.56068 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347
#> Nb_Comp_6 33.33432 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804
#> Nb_Comp_7 33.27406 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976
#> Nb_Comp_8 33.51655 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217
#> Nb_Comp_9 33.61228 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815
#> Nb_Comp_10 33.64096 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632
#> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive
#> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032
#> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251
#> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501
#> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422
#> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041
#> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588
#> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601
#> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352
#> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936
#> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232
#> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468
#> GMDL.naive
#> Nb_Comp_0 -67.17645
#> Nb_Comp_1 -79.67755
#> Nb_Comp_2 -81.93501
#> Nb_Comp_3 -83.31503
#> Nb_Comp_4 -83.23369
#> Nb_Comp_5 -81.93513
#> Nb_Comp_6 -80.42345
#> Nb_Comp_7 -78.87607
#> Nb_Comp_8 -77.31942
#> Nb_Comp_9 -75.80069
#> Nb_Comp_10 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[3]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA NA
#> Nb_Comp_1 126.4083 27 46 -0.1622540 0.0975 -0.1622540
#> Nb_Comp_2 119.3375 25 44 -0.8255452 0.0975 -0.5706938
#> Nb_Comp_3 114.2313 27 45 -2.4072694 0.0975 -0.8664393
#> Nb_Comp_4 112.3463 23 51 -6.4582755 0.0975 -1.1889304
#> Nb_Comp_5 113.2362 22 55 -16.1937772 0.0975 -1.3053288
#> Nb_Comp_6 114.7620 21 52 -39.7491244 0.0975 -1.3699926
#> Nb_Comp_7 116.5264 20 51 -97.1711222 0.0975 -1.4091591
#> Nb_Comp_8 118.4601 20 51 -237.2500136 0.0975 -1.4268849
#> Nb_Comp_9 120.4452 19 51 -579.3076122 0.0975 -1.4357086
#> Nb_Comp_10 122.4395 19 51 -1416.9673756 0.0975 -1.4434754
#> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof
#> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061
#> Nb_Comp_1 30.11803 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114
#> Nb_Comp_2 30.44140 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950
#> Nb_Comp_3 33.15186 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572
#> Nb_Comp_4 36.31208 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285
#> Nb_Comp_5 36.84078 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347
#> Nb_Comp_6 37.47205 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804
#> Nb_Comp_7 37.91799 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976
#> Nb_Comp_8 38.11058 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217
#> Nb_Comp_9 38.22475 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815
#> Nb_Comp_10 38.34113 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632
#> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive
#> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032
#> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251
#> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501
#> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422
#> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041
#> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588
#> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601
#> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352
#> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936
#> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232
#> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468
#> GMDL.naive
#> Nb_Comp_0 -67.17645
#> Nb_Comp_1 -79.67755
#> Nb_Comp_2 -81.93501
#> Nb_Comp_3 -83.31503
#> Nb_Comp_4 -83.23369
#> Nb_Comp_5 -81.93513
#> Nb_Comp_6 -80.42345
#> Nb_Comp_7 -78.87607
#> Nb_Comp_8 -77.31942
#> Nb_Comp_9 -75.80069
#> Nb_Comp_10 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
# }