Extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models
Source:R/kfolds2CVinfos_lm.R
kfolds2CVinfos_lm.RdThis function extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models for both formula or classic specifications of the model.
Arguments
- pls_kfolds
an object computed using
PLS_lm_kfoldcv- MClassed
should number of miss classed be computed
- verbose
should infos be displayed ?
Value
- list
table of fit statistics for first group partition
- list()
...
- list
table of fit statistics for last group partition
References
Nicolas Meyer, Myriam Maumy-Bertrand et Frédéric Bertrand (2010). Comparing the linear and the logistic PLS regression with qualitative predictors: application to allelotyping data. Journal de la Societe Francaise de Statistique, 151(2), pages 1-18. https://ojs-test.apps.ocp.math.cnrs.fr/index.php/J-SFdS/article/view/47/
See also
kfolds2coeff, kfolds2Pressind,
kfolds2Press, kfolds2Mclassedind and
kfolds2Mclassed to extract and transforms results from k-fold
cross-validation.
Author
Frédéric Bertrand
frederic.bertrand@lecnam.net
https://fbertran.github.io/homepage/
Examples
# \donttest{
data(Cornell)
summary(cv.plsR(Y~.,data=Cornell,nt=10,K=6,verbose=FALSE))
#> ____************************************************____
#> ____Component____ 1 ____
#> ____Component____ 2 ____
#> ____Component____ 3 ____
#> ____Component____ 4 ____
#> ____Component____ 5 ____
#> ____Component____ 6 ____
#> ____Predicting X without NA neither in X nor in Y____
#> ****________________________________________________****
#>
#>
#> NK: 1
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y
#> Nb_Comp_0 82.01205 NA NA NA NA 467.796667 NA
#> Nb_Comp_1 53.15173 0.8891499 0.0975 0.88914986 51.85532 35.742486 0.9235940
#> Nb_Comp_2 41.08283 0.8924882 0.0975 0.03011555 34.66608 11.066606 0.9763431
#> Nb_Comp_3 32.06411 0.7890397 0.0975 -0.96220582 21.71496 4.418081 0.9905556
#> Nb_Comp_4 33.76477 -0.3457986 0.0975 -5.37939214 28.18467 4.309235 0.9907882
#> Nb_Comp_5 33.34373 -9.0996014 0.0975 -6.50454125 32.33883 3.521924 0.9924713
#> Nb_Comp_6 35.25533 NA 0.0975 NA NA 3.496074 0.9925265
#> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 37.010388 1.000000 6.5212706 46.0708838 47.7893514 27.59461
#> Nb_Comp_1 8.150064 2.740749 1.8665281 4.5699686 4.9558156 21.34020
#> Nb_Comp_2 -3.918831 5.085967 1.1825195 2.1075461 2.3949331 27.40202
#> Nb_Comp_3 -12.937550 5.121086 0.7488308 0.8467795 0.9628191 24.40842
#> Nb_Comp_4 -11.236891 5.103312 0.7387162 0.8232505 0.9357846 24.23105
#> Nb_Comp_5 -11.657929 6.006316 0.7096382 0.7976101 0.9198348 28.21184
#> Nb_Comp_6 -9.746328 7.000001 0.7633342 0.9711319 1.1359499 33.18347
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 6.5212706 46.0708838 47.7893514 27.59461
#> Nb_Comp_1 2 1.8905683 4.1699567 4.4588195 18.37545
#> Nb_Comp_2 3 1.1088836 1.5370286 1.6860917 17.71117
#> Nb_Comp_3 4 0.7431421 0.7363469 0.8256118 19.01033
#> Nb_Comp_4 5 0.7846050 0.8721072 0.9964867 24.16510
#> Nb_Comp_5 6 0.7661509 0.8804809 1.0227979 28.64206
#> Nb_Comp_6 7 0.8361907 1.1070902 1.3048716 33.63927
#> attr(,"computed_nt")
#> [1] 6
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(pine)
summary(cv.plsR(x11~.,data=pine,nt=10,NK=3,verbose=FALSE),verbose=FALSE)
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.61896 0.34143030 0.0975 0.3414303 13.69835 11.074659
#> Nb_Comp_2 58.47638 0.26992365 0.0975 -0.1085787 12.27713 8.919303
#> Nb_Comp_3 56.55421 0.08342136 0.0975 -0.2554559 11.19779 7.919786
#> Nb_Comp_4 54.35053 -0.22951920 0.0975 -0.3414225 10.62378 6.972542
#> Nb_Comp_5 55.99834 -0.92050352 0.0975 -0.5619955 10.89108 6.898523
#> Nb_Comp_6 57.69592 -2.18249648 0.0975 -0.6571157 11.43165 6.835594
#> Nb_Comp_7 59.37953 -4.76726507 0.0975 -0.8121827 12.38734 6.770369
#> Nb_Comp_8 61.21213 -9.57209802 0.0975 -0.8331216 12.41091 6.736112
#> Nb_Comp_9 63.18426 -20.66938306 0.0975 -1.0496767 13.80685 6.730426
#> Nb_Comp_10 65.15982 -43.90873764 0.0975 -1.0724511 13.94848 6.725443
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof
#> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787
#> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153
#> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090
#> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535
#> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689
#> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912
#> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121
#> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445
#> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783
#> Nb_Comp_9 0.6764242 77.39986 10.732146 0.5378276 0.3920957 0.5328746
#> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065
#> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 -5.600237 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[2]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.61896 0.28463173 0.0975 0.2846317 14.87977 11.074659
#> Nb_Comp_2 58.47638 0.08550585 0.0975 -0.2783544 14.15734 8.919303
#> Nb_Comp_3 56.55421 -0.28686462 0.0975 -0.4071874 12.55113 7.919786
#> Nb_Comp_4 54.35053 -0.69422277 0.0975 -0.3165509 10.42680 6.972542
#> Nb_Comp_5 55.99834 -1.64520818 0.0975 -0.5613107 10.88630 6.898523
#> Nb_Comp_6 57.69592 -3.14196021 0.0975 -0.5658352 10.80195 6.835594
#> Nb_Comp_7 59.37953 -6.06400936 0.0975 -0.7054749 11.65793 6.770369
#> Nb_Comp_8 61.21213 -12.74615589 0.0975 -0.9459425 13.17475 6.736112
#> Nb_Comp_9 63.18426 -34.46678024 0.0975 -1.5801235 17.38000 6.730426
#> Nb_Comp_10 65.15982 -94.24468587 0.0975 -1.6854619 18.07430 6.725443
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof
#> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787
#> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153
#> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090
#> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535
#> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689
#> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912
#> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121
#> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445
#> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783
#> Nb_Comp_9 0.6764242 77.39986 10.732146 0.5378276 0.3920957 0.5328746
#> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065
#> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 -5.600237 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[3]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 NA
#> Nb_Comp_1 63.61896 0.3548715 0.0975 0.3548715 13.41877 11.074659 0.4675684
#> Nb_Comp_2 58.47638 0.1005076 0.0975 -0.3942842 15.44122 8.919303 0.5711905
#> Nb_Comp_3 56.55421 -0.4053135 0.0975 -0.5623405 13.93499 7.919786 0.6192438
#> Nb_Comp_4 54.35053 -1.1113926 0.0975 -0.5024353 11.89897 6.972542 0.6647841
#> Nb_Comp_5 55.99834 -2.5188421 0.0975 -0.6665978 11.62042 6.898523 0.6683426
#> Nb_Comp_6 57.69592 -5.1251857 0.0975 -0.7406822 12.00814 6.835594 0.6713681
#> Nb_Comp_7 59.37953 -9.9108950 0.0975 -0.7813166 12.17636 6.770369 0.6745039
#> Nb_Comp_8 61.21213 -19.3346292 0.0975 -0.8636995 12.61793 6.736112 0.6761508
#> Nb_Comp_9 63.18426 -38.7720360 0.0975 -0.9558771 13.17501 6.730426 0.6764242
#> Nb_Comp_10 65.15982 -78.1988432 0.0975 -0.9913198 13.40243 6.725443 0.6766638
#> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 96.63448 1.000000 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 77.83455 3.176360 0.5994089 0.4047616 0.4565153 -9.875081
#> Nb_Comp_2 72.69198 7.133559 0.5761829 0.4138120 0.5212090 -6.985517
#> Nb_Comp_3 70.76981 8.778329 0.5603634 0.4070516 0.5320535 -6.260610
#> Nb_Comp_4 68.56612 8.427874 0.5221703 0.3505594 0.4547689 -8.152986
#> Nb_Comp_5 70.21393 9.308247 0.5285695 0.3666578 0.4845912 -7.111583
#> Nb_Comp_6 71.91152 9.291931 0.5259794 0.3629363 0.4795121 -7.233043
#> Nb_Comp_7 73.59512 9.756305 0.5284535 0.3702885 0.4938445 -6.742195
#> Nb_Comp_8 75.42772 10.363948 0.5338475 0.3831339 0.5170783 -6.038372
#> Nb_Comp_9 77.39986 10.732146 0.5378276 0.3920957 0.5328746 -5.600237
#> Nb_Comp_10 79.37542 11.000000 0.5407500 0.3987417 0.5446065 -5.288422
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5977015 0.3788984 0.4112998 -11.451340
#> Nb_Comp_2 3 0.5452615 0.3243383 0.3647862 -12.822703
#> Nb_Comp_3 4 0.5225859 0.3061986 0.3557368 -12.756838
#> Nb_Comp_4 5 0.4990184 0.2867496 0.3432131 -12.811575
#> Nb_Comp_5 6 0.5054709 0.3019556 0.3714754 -11.329638
#> Nb_Comp_6 7 0.5127450 0.3186757 0.4021333 -9.918688
#> Nb_Comp_7 8 0.5203986 0.3364668 0.4347156 -8.592770
#> Nb_Comp_8 9 0.5297842 0.3572181 0.4717708 -7.287834
#> Nb_Comp_9 10 0.5409503 0.3813021 0.5140048 -6.008747
#> Nb_Comp_10 11 0.5529032 0.4076026 0.5600977 -4.799453
#> attr(,"computed_nt")
#> [1] 10
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(pineNAX21)
summary(cv.plsR(x11~.,data=pineNAX21,nt=10,NK=3,
verbose=FALSE),verbose=FALSE)
#> [[1]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.69250 3.689453e-01 0.0975 0.3689453 13.12603 11.099368
#> Nb_Comp_2 58.35228 2.446595e-01 0.0975 -0.1969494 13.28538 8.885823
#> Nb_Comp_3 56.36553 -3.658773e-02 0.0975 -0.3723449 12.19441 7.874634
#> Nb_Comp_4 54.02416 -3.954200e-01 0.0975 -0.3461668 10.60057 6.903925
#> Nb_Comp_5 55.80450 -1.586362e+00 0.0975 -0.8534646 12.79618 6.858120
#> Nb_Comp_6 57.45753 -2.978148e+00 0.0975 -0.5381253 10.54865 6.786392
#> Nb_Comp_7 58.73951 -4.944752e+00 0.0975 -0.4943517 10.14126 6.640327
#> Nb_Comp_8 60.61227 -1.366657e+01 0.0975 -1.4671455 16.38265 6.614773
#> Nb_Comp_9 62.25948 -2.463404e+04 0.0975 -1678.6731224 11110.65608 6.544432
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 NA 96.63448 NA NA NA NA NA
#> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA
#> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA
#> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA
#> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA
#> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA
#> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA
#> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA
#> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA
#> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> [[2]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 NA
#> Nb_Comp_1 63.69250 0.2773570 0.0975 0.2773570 15.03108 11.099368 0.4663804
#> Nb_Comp_2 58.35228 -0.0137867 0.0975 -0.4028873 15.57116 8.885823 0.5728001
#> Nb_Comp_3 56.36553 -0.8254533 0.0975 -0.8006286 16.00007 7.874634 0.6214146
#> Nb_Comp_4 54.02416 -2.1827296 0.0975 -0.7435283 13.72965 6.903925 0.6680830
#> Nb_Comp_5 55.80450 -4.6837578 0.0975 -0.7858124 12.32911 6.858120 0.6702851
#> Nb_Comp_6 57.45753 -11.0096205 0.0975 -1.1129719 14.49102 6.786392 0.6737336
#> Nb_Comp_7 58.73951 -41.0168756 0.0975 -2.4986015 23.74288 6.640327 0.6807558
#> Nb_Comp_8 60.61227 -86.9749267 0.0975 -1.0937998 13.90352 6.614773 0.6819844
#> Nb_Comp_9 62.25948 -250.6455708 0.0975 -1.8604238 18.92105 6.544432 0.6853661
#> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive
#> Nb_Comp_0 96.63448 NA NA NA NA NA 1
#> Nb_Comp_1 77.90810 NA NA NA NA NA 2
#> Nb_Comp_2 72.56787 NA NA NA NA NA 3
#> Nb_Comp_3 70.58113 NA NA NA NA NA 4
#> Nb_Comp_4 68.23976 NA NA NA NA NA 5
#> Nb_Comp_5 70.02009 NA NA NA NA NA 6
#> Nb_Comp_6 71.67313 NA NA NA NA NA 7
#> Nb_Comp_7 72.95511 NA NA NA NA NA 8
#> Nb_Comp_8 74.82787 NA NA NA NA NA 9
#> Nb_Comp_9 76.47507 NA NA NA NA NA 10
#> sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> [[3]]
#> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y
#> Nb_Comp_0 82.41888 NA NA NA NA 20.800152
#> Nb_Comp_1 63.69250 0.3433516 0.0975 0.3433516 13.65839 11.099368
#> Nb_Comp_2 58.35228 0.1184464 0.0975 -0.3425048 14.90095 8.885823
#> Nb_Comp_3 56.36553 -0.4485905 0.0975 -0.6432245 14.60140 7.874634
#> Nb_Comp_4 54.02416 -2.2128015 0.0975 -1.2178812 17.46500 6.903925
#> Nb_Comp_5 55.80450 -7.0554393 0.0975 -1.5072944 17.31017 6.858120
#> Nb_Comp_6 57.45753 -22.3022732 0.0975 -1.8927377 19.83874 6.786392
#> Nb_Comp_7 58.73951 -69.0046549 0.0975 -2.0041985 20.38767 6.640327
#> Nb_Comp_8 60.61227 -183.9079421 0.0975 -1.6413664 17.53954 6.614773
#> Nb_Comp_9 62.25948 -1296.6489496 0.0975 -6.0178108 46.42122 6.544432
#> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof
#> Nb_Comp_0 NA 96.63448 NA NA NA NA NA
#> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA
#> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA
#> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA
#> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA
#> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA
#> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA
#> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA
#> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA
#> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA
#> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128
#> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749
#> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656
#> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843
#> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035
#> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498
#> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119
#> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873
#> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679
#> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403
#> attr(,"computed_nt")
#> [1] 9
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
data(aze_compl)
summary(cv.plsR(y~.,data=aze_compl,nt=10,K=8,NK=3,
verbose=FALSE),MClassed=TRUE,verbose=FALSE)
#> [[1]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA NA
#> Nb_Comp_1 126.4083 27 49 -0.1368662 0.0975 -0.1368662
#> Nb_Comp_2 119.3375 25 49 -0.8185600 0.0975 -0.5996253
#> Nb_Comp_3 114.2313 27 46 -2.5283201 0.0975 -0.9401725
#> Nb_Comp_4 112.3463 23 47 -7.0626433 0.0975 -1.2851224
#> Nb_Comp_5 113.2362 22 48 -18.5043381 0.0975 -1.4190997
#> Nb_Comp_6 114.7620 21 47 -46.7882273 0.0975 -1.4501333
#> Nb_Comp_7 116.5264 20 48 -117.0042049 0.0975 -1.4693154
#> Nb_Comp_8 118.4601 20 49 -291.2541052 0.0975 -1.4766415
#> Nb_Comp_9 120.4452 19 51 -723.6378608 0.0975 -1.4794788
#> Nb_Comp_10 122.4395 19 50 -1798.1799077 0.0975 -1.4828677
#> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof
#> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061
#> Nb_Comp_1 29.46014 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114
#> Nb_Comp_2 31.00212 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950
#> Nb_Comp_3 34.46152 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572
#> Nb_Comp_4 37.90781 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285
#> Nb_Comp_5 38.65892 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347
#> Nb_Comp_6 38.73915 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804
#> Nb_Comp_7 38.86480 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976
#> Nb_Comp_8 38.89193 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217
#> Nb_Comp_9 38.91166 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815
#> Nb_Comp_10 38.95924 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632
#> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive
#> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032
#> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251
#> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501
#> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422
#> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041
#> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588
#> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601
#> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352
#> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936
#> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232
#> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468
#> GMDL.naive
#> Nb_Comp_0 -67.17645
#> Nb_Comp_1 -79.67755
#> Nb_Comp_2 -81.93501
#> Nb_Comp_3 -83.31503
#> Nb_Comp_4 -83.23369
#> Nb_Comp_5 -81.93513
#> Nb_Comp_6 -80.42345
#> Nb_Comp_7 -78.87607
#> Nb_Comp_8 -77.31942
#> Nb_Comp_9 -75.80069
#> Nb_Comp_10 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[2]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA
#> Nb_Comp_1 126.4083 27 45 -0.07857776 0.0975
#> Nb_Comp_2 119.3375 25 47 -0.59171657 0.0975
#> Nb_Comp_3 114.2313 27 45 -1.69522692 0.0975
#> Nb_Comp_4 112.3463 23 45 -4.47704805 0.0975
#> Nb_Comp_5 113.2362 22 44 -10.93869348 0.0975
#> Nb_Comp_6 114.7620 21 44 -25.39654102 0.0975
#> Nb_Comp_7 116.5264 20 46 -57.77527876 0.0975
#> Nb_Comp_8 118.4601 20 45 -130.87323918 0.0975
#> Nb_Comp_9 120.4452 19 45 -295.04907574 0.0975
#> Nb_Comp_10 122.4395 19 46 -664.66054181 0.0975
#> Q2_Y PRESS_Y RSS_Y R2_Y AIC.std DoF.dof
#> Nb_Comp_0 NA NA 25.91346 NA 298.1344 1.00000
#> Nb_Comp_1 -0.07857776 27.94968 19.38086 0.2520929 269.9248 22.55372
#> Nb_Comp_2 -0.47575505 28.60141 17.76209 0.3145613 262.8540 27.31542
#> Nb_Comp_3 -0.69328320 30.07625 16.58896 0.3598323 257.7478 30.52370
#> Nb_Comp_4 -1.03212872 33.71091 15.98071 0.3833049 255.8628 34.00000
#> Nb_Comp_5 -1.17976789 34.83423 15.81104 0.3898523 256.7527 34.00000
#> Nb_Comp_6 -1.21100752 34.95833 15.73910 0.3926285 258.2785 34.00000
#> Nb_Comp_7 -1.22662805 35.04512 15.70350 0.3940024 260.0429 33.71066
#> Nb_Comp_8 -1.24368547 35.23370 15.69348 0.3943888 261.9766 34.00000
#> Nb_Comp_9 -1.24495188 35.23111 15.69123 0.3944758 263.9617 33.87284
#> Nb_Comp_10 -1.24848039 35.28142 15.69037 0.3945088 265.9560 34.00000
#> sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive sigmahat.naive
#> Nb_Comp_0 0.5015845 0.2540061 0.2604032 -67.17645 1 0.5015845
#> Nb_Comp_1 0.4848429 0.2883114 0.4231184 -53.56607 2 0.4358996
#> Nb_Comp_2 0.4781670 0.2908950 0.4496983 -52.42272 3 0.4193593
#> Nb_Comp_3 0.4719550 0.2902572 0.4631316 -51.93343 4 0.4072955
#> Nb_Comp_4 0.4744263 0.3008285 0.4954133 -50.37079 5 0.4017727
#> Nb_Comp_5 0.4719012 0.2976347 0.4901536 -50.65724 6 0.4016679
#> Nb_Comp_6 0.4708264 0.2962804 0.4879234 -50.78005 7 0.4028135
#> Nb_Comp_7 0.4693382 0.2937976 0.4826103 -51.05525 8 0.4044479
#> Nb_Comp_8 0.4701436 0.2954217 0.4865092 -50.85833 9 0.4064413
#> Nb_Comp_9 0.4696894 0.2945815 0.4845867 -50.95616 10 0.4085682
#> Nb_Comp_10 0.4700970 0.2953632 0.4864128 -50.86368 11 0.4107477
#> AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 0.2540061 0.2604032 -67.17645
#> Nb_Comp_1 0.1936625 0.2033251 -79.67755
#> Nb_Comp_2 0.1809352 0.1943501 -81.93501
#> Nb_Comp_3 0.1722700 0.1891422 -83.31503
#> Nb_Comp_4 0.1691819 0.1897041 -83.23369
#> Nb_Comp_5 0.1706451 0.1952588 -81.93513
#> Nb_Comp_6 0.1731800 0.2020601 -80.42345
#> Nb_Comp_7 0.1761610 0.2094352 -78.87607
#> Nb_Comp_8 0.1794902 0.2172936 -77.31942
#> Nb_Comp_9 0.1829787 0.2254232 -75.80069
#> Nb_Comp_10 0.1865584 0.2337468 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> [[3]]
#> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y
#> Nb_Comp_0 154.6179 49 NA NA NA
#> Nb_Comp_1 126.4083 27 45 -0.07734514 0.0975
#> Nb_Comp_2 119.3375 25 47 -0.61509174 0.0975
#> Nb_Comp_3 114.2313 27 44 -1.78602960 0.0975
#> Nb_Comp_4 112.3463 23 49 -4.62556047 0.0975
#> Nb_Comp_5 113.2362 22 50 -11.01547272 0.0975
#> Nb_Comp_6 114.7620 21 48 -24.89121970 0.0975
#> Nb_Comp_7 116.5264 20 46 -55.26405985 0.0975
#> Nb_Comp_8 118.4601 20 47 -122.14222785 0.0975
#> Nb_Comp_9 120.4452 19 47 -269.68191047 0.0975
#> Nb_Comp_10 122.4395 19 47 -594.95793713 0.0975
#> Q2_Y PRESS_Y RSS_Y R2_Y AIC.std DoF.dof
#> Nb_Comp_0 NA NA 25.91346 NA 298.1344 1.00000
#> Nb_Comp_1 -0.07734514 27.91774 19.38086 0.2520929 269.9248 22.55372
#> Nb_Comp_2 -0.49914051 29.05464 17.76209 0.3145613 262.8540 27.31542
#> Nb_Comp_3 -0.72499774 30.63956 16.58896 0.3598323 257.7478 30.52370
#> Nb_Comp_4 -1.01920341 33.49649 15.98071 0.3833049 255.8628 34.00000
#> Nb_Comp_5 -1.13587122 34.13273 15.81104 0.3898523 256.7527 34.00000
#> Nb_Comp_6 -1.15482323 34.07000 15.73910 0.3926285 258.2785 34.00000
#> Nb_Comp_7 -1.17309422 34.20255 15.70350 0.3940024 260.0429 33.71066
#> Nb_Comp_8 -1.18864810 34.36943 15.69348 0.3943888 261.9766 34.00000
#> Nb_Comp_9 -1.19812420 34.49622 15.69123 0.3944758 263.9617 33.87284
#> Nb_Comp_10 -1.20169104 34.54724 15.69037 0.3945088 265.9560 34.00000
#> sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive sigmahat.naive
#> Nb_Comp_0 0.5015845 0.2540061 0.2604032 -67.17645 1 0.5015845
#> Nb_Comp_1 0.4848429 0.2883114 0.4231184 -53.56607 2 0.4358996
#> Nb_Comp_2 0.4781670 0.2908950 0.4496983 -52.42272 3 0.4193593
#> Nb_Comp_3 0.4719550 0.2902572 0.4631316 -51.93343 4 0.4072955
#> Nb_Comp_4 0.4744263 0.3008285 0.4954133 -50.37079 5 0.4017727
#> Nb_Comp_5 0.4719012 0.2976347 0.4901536 -50.65724 6 0.4016679
#> Nb_Comp_6 0.4708264 0.2962804 0.4879234 -50.78005 7 0.4028135
#> Nb_Comp_7 0.4693382 0.2937976 0.4826103 -51.05525 8 0.4044479
#> Nb_Comp_8 0.4701436 0.2954217 0.4865092 -50.85833 9 0.4064413
#> Nb_Comp_9 0.4696894 0.2945815 0.4845867 -50.95616 10 0.4085682
#> Nb_Comp_10 0.4700970 0.2953632 0.4864128 -50.86368 11 0.4107477
#> AIC.naive BIC.naive GMDL.naive
#> Nb_Comp_0 0.2540061 0.2604032 -67.17645
#> Nb_Comp_1 0.1936625 0.2033251 -79.67755
#> Nb_Comp_2 0.1809352 0.1943501 -81.93501
#> Nb_Comp_3 0.1722700 0.1891422 -83.31503
#> Nb_Comp_4 0.1691819 0.1897041 -83.23369
#> Nb_Comp_5 0.1706451 0.1952588 -81.93513
#> Nb_Comp_6 0.1731800 0.2020601 -80.42345
#> Nb_Comp_7 0.1761610 0.2094352 -78.87607
#> Nb_Comp_8 0.1794902 0.2172936 -77.31942
#> Nb_Comp_9 0.1829787 0.2254232 -75.80069
#> Nb_Comp_10 0.1865584 0.2337468 -74.33325
#> attr(,"computed_nt")
#> [1] 10
#>
#> attr(,"class")
#> [1] "summary.cv.plsRmodel"
# }