R/kfolds2CVinfos_lm.R
kfolds2CVinfos_lm.RdThis function extracts and computes information criteria and fits statistics for k-fold cross validated partial least squares models for both formula or classic specifications of the model.
kfolds2CVinfos_lm(pls_kfolds, MClassed = FALSE, verbose = TRUE)
| pls_kfolds | an object computed using |
|---|---|
| MClassed | should number of miss classed be computed |
| verbose | should infos be displayed ? |
table of fit statistics for first group partition
...
table of fit statistics for last group partition
The Mclassed option should only set to TRUE if the response is
binary.
Use summary and cv.plsR instead.
Nicolas Meyer, Myriam Maumy-Bertrand et Frédéric Bertrand (2010). Comparing the linear and the logistic PLS regression with qualitative predictors: application to allelotyping data. Journal de la Societe Francaise de Statistique, 151(2), pages 1-18. http://publications-sfds.math.cnrs.fr/index.php/J-SFdS/article/view/47
kfolds2coeff, kfolds2Pressind,
kfolds2Press, kfolds2Mclassedind and
kfolds2Mclassed to extract and transforms results from k-fold
cross-validation.
Frédéric Bertrand
frederic.bertrand@utt.fr
https://fbertran.github.io/homepage/
#> ____************************************************____ #> ____Component____ 1 ____ #> ____Component____ 2 ____ #> ____Component____ 3 ____ #> ____Component____ 4 ____ #> ____Component____ 5 ____ #> ____Component____ 6 ____ #> Warning : 1 2 3 4 5 6 7 < 10^{-12} #> Warning only 6 components could thus be extracted #> ____Predicting X without NA neither in X nor in Y____ #> ****________________________________________________**** #> #> #> NK: 1#> [[1]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y R2_Y #> Nb_Comp_0 82.01205 NA NA NA NA 467.796667 NA #> Nb_Comp_1 53.15173 0.8931139 0.0975 0.89311387 50.00098 35.742486 0.9235940 #> Nb_Comp_2 41.08283 0.8827013 0.0975 -0.09741769 39.22444 11.066606 0.9763431 #> Nb_Comp_3 32.06411 0.7545436 0.0975 -1.09257499 23.15770 4.418081 0.9905556 #> Nb_Comp_4 33.76477 -0.4218576 0.0975 -4.79270956 25.59266 4.309235 0.9907882 #> Nb_Comp_5 33.34373 -9.6400064 0.0975 -6.48317314 32.24675 3.521924 0.9924713 #> Nb_Comp_6 35.25533 NA 0.0975 NA NA 3.496074 0.9925265 #> AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof #> Nb_Comp_0 37.010388 1.000000 6.5212706 46.0708838 47.7893514 27.59461 #> Nb_Comp_1 8.150064 2.740749 1.8665281 4.5699686 4.9558156 21.34020 #> Nb_Comp_2 -3.918831 5.085967 1.1825195 2.1075461 2.3949331 27.40202 #> Nb_Comp_3 -12.937550 5.121086 0.7488308 0.8467795 0.9628191 24.40842 #> Nb_Comp_4 -11.236891 5.103312 0.7387162 0.8232505 0.9357846 24.23105 #> Nb_Comp_5 -11.657929 6.006316 0.7096382 0.7976101 0.9198348 28.21184 #> Nb_Comp_6 -9.746328 7.000002 0.7633343 0.9711322 1.1359501 33.18348 #> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 1 6.5212706 46.0708838 47.7893514 27.59461 #> Nb_Comp_1 2 1.8905683 4.1699567 4.4588195 18.37545 #> Nb_Comp_2 3 1.1088836 1.5370286 1.6860917 17.71117 #> Nb_Comp_3 4 0.7431421 0.7363469 0.8256118 19.01033 #> Nb_Comp_4 5 0.7846050 0.8721072 0.9964867 24.16510 #> Nb_Comp_5 6 0.7661509 0.8804809 1.0227979 28.64206 #> Nb_Comp_6 7 0.8361907 1.1070902 1.3048716 33.63927 #> attr(,"computed_nt") #> [1] 6 #> #> attr(,"class") #> [1] "summary.cv.plsRmodel"#> [[1]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.61896 0.2524957 0.0975 0.2524957 15.54820 11.074659 #> Nb_Comp_2 58.47638 -0.4059117 0.0975 -0.8808077 20.82930 8.919303 #> Nb_Comp_3 56.55421 -2.3701532 0.0975 -1.3971300 21.38073 7.919786 #> Nb_Comp_4 54.35053 -7.1380325 0.0975 -1.4147367 19.12420 6.972542 #> Nb_Comp_5 55.99834 -21.3317065 0.0975 -1.7441162 19.13346 6.898523 #> Nb_Comp_6 57.69592 -61.8227477 0.0975 -1.8131638 19.40668 6.835594 #> Nb_Comp_7 59.37953 -195.6320969 0.0975 -2.1299506 21.39507 6.770369 #> Nb_Comp_8 61.21213 -569.3861000 0.0975 -1.9007782 19.63934 6.736112 #> Nb_Comp_9 63.18426 -1659.4082959 0.0975 -1.9110252 19.60899 6.730426 #> Nb_Comp_10 65.15982 -4903.9188404 0.0975 -1.9540438 19.88197 6.725443 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof #> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787 #> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153 #> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090 #> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535 #> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689 #> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912 #> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121 #> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445 #> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783 #> Nb_Comp_9 0.6764242 77.39986 10.732136 0.5378275 0.3920954 0.5328742 #> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065 #> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340 #> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703 #> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838 #> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575 #> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638 #> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688 #> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770 #> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834 #> Nb_Comp_9 -5.600249 10 0.5409503 0.3813021 0.5140048 -6.008747 #> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453 #> attr(,"computed_nt") #> [1] 10 #> #> [[2]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.61896 0.30583260 0.0975 0.3058326 14.43879 11.074659 #> Nb_Comp_2 58.47638 -0.04771339 0.0975 -0.5093094 16.71509 8.919303 #> Nb_Comp_3 56.55421 -1.08065939 0.0975 -0.9859051 17.71289 7.919786 #> Nb_Comp_4 54.35053 -3.45410702 0.0975 -1.1407190 16.95404 6.972542 #> Nb_Comp_5 55.99834 -9.58877040 0.0975 -1.3773049 16.57586 6.898523 #> Nb_Comp_6 57.69592 -23.56419460 0.0975 -1.3198345 16.00343 6.835594 #> Nb_Comp_7 59.37953 -57.04052789 0.0975 -1.3628101 16.15121 6.770369 #> Nb_Comp_8 61.21213 -145.81509386 0.0975 -1.5295272 17.12583 6.736112 #> Nb_Comp_9 63.18426 -375.06970076 0.0975 -1.5615193 17.25468 6.730426 #> Nb_Comp_10 65.15982 -968.97005847 0.0975 -1.5792295 17.35931 6.725443 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof #> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787 #> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153 #> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090 #> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535 #> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689 #> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912 #> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121 #> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445 #> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783 #> Nb_Comp_9 0.6764242 77.39986 10.732136 0.5378275 0.3920954 0.5328742 #> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065 #> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340 #> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703 #> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838 #> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575 #> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638 #> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688 #> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770 #> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834 #> Nb_Comp_9 -5.600249 10 0.5409503 0.3813021 0.5140048 -6.008747 #> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453 #> attr(,"computed_nt") #> [1] 10 #> #> [[3]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.61896 0.2836758 0.0975 0.2836758 14.89965 11.074659 #> Nb_Comp_2 58.47638 0.1687602 0.0975 -0.1604241 12.85130 8.919303 #> Nb_Comp_3 56.55421 -0.1115724 0.0975 -0.3372464 11.92731 7.919786 #> Nb_Comp_4 54.35053 -0.9543054 0.0975 -0.7581450 13.92413 6.972542 #> Nb_Comp_5 55.99834 -2.8509953 0.0975 -0.9705187 13.73952 6.898523 #> Nb_Comp_6 57.69592 -6.5680846 0.0975 -0.9652282 13.55717 6.835594 #> Nb_Comp_7 59.37953 -14.3119269 0.0975 -1.0232235 13.82993 6.770369 #> Nb_Comp_8 61.21213 -30.2195942 0.0975 -1.0389069 13.80415 6.736112 #> Nb_Comp_9 63.18426 -65.5737652 0.0975 -1.1324353 14.36432 6.730426 #> Nb_Comp_10 65.15982 -145.6150317 0.0975 -1.2022944 14.82238 6.725443 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof #> Nb_Comp_0 NA 96.63448 1.000000 0.8062287 0.6697018 0.6991787 #> Nb_Comp_1 0.4675684 77.83455 3.176360 0.5994089 0.4047616 0.4565153 #> Nb_Comp_2 0.5711905 72.69198 7.133559 0.5761829 0.4138120 0.5212090 #> Nb_Comp_3 0.6192438 70.76981 8.778329 0.5603634 0.4070516 0.5320535 #> Nb_Comp_4 0.6647841 68.56612 8.427874 0.5221703 0.3505594 0.4547689 #> Nb_Comp_5 0.6683426 70.21393 9.308247 0.5285695 0.3666578 0.4845912 #> Nb_Comp_6 0.6713681 71.91152 9.291931 0.5259794 0.3629363 0.4795121 #> Nb_Comp_7 0.6745039 73.59512 9.756305 0.5284535 0.3702885 0.4938445 #> Nb_Comp_8 0.6761508 75.42772 10.363948 0.5338475 0.3831339 0.5170783 #> Nb_Comp_9 0.6764242 77.39986 10.732136 0.5378275 0.3920954 0.5328742 #> Nb_Comp_10 0.6766638 79.37542 11.000000 0.5407500 0.3987417 0.5446065 #> GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 -3.605128 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 -9.875081 2 0.5977015 0.3788984 0.4112998 -11.451340 #> Nb_Comp_2 -6.985517 3 0.5452615 0.3243383 0.3647862 -12.822703 #> Nb_Comp_3 -6.260610 4 0.5225859 0.3061986 0.3557368 -12.756838 #> Nb_Comp_4 -8.152986 5 0.4990184 0.2867496 0.3432131 -12.811575 #> Nb_Comp_5 -7.111583 6 0.5054709 0.3019556 0.3714754 -11.329638 #> Nb_Comp_6 -7.233043 7 0.5127450 0.3186757 0.4021333 -9.918688 #> Nb_Comp_7 -6.742195 8 0.5203986 0.3364668 0.4347156 -8.592770 #> Nb_Comp_8 -6.038372 9 0.5297842 0.3572181 0.4717708 -7.287834 #> Nb_Comp_9 -5.600249 10 0.5409503 0.3813021 0.5140048 -6.008747 #> Nb_Comp_10 -5.288422 11 0.5529032 0.4076026 0.5600977 -4.799453 #> attr(,"computed_nt") #> [1] 10 #> #> attr(,"class") #> [1] "summary.cv.plsRmodel"#> [[1]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.69250 0.34379557 0.0975 0.3437956 13.64915 11.099368 #> Nb_Comp_2 58.35228 0.24147514 0.0975 -0.1559277 12.83007 8.885823 #> Nb_Comp_3 56.36553 -0.07844383 0.0975 -0.4217647 12.63355 7.874634 #> Nb_Comp_4 54.02416 -0.81709069 0.0975 -0.6849192 13.26812 6.903925 #> Nb_Comp_5 55.80450 -3.84079157 0.0975 -1.6640341 18.39229 6.858120 #> Nb_Comp_6 57.45753 -12.56989896 0.0975 -1.8032397 19.22495 6.786392 #> Nb_Comp_7 58.73951 -54.58483571 0.0975 -3.0961864 27.79832 6.640327 #> Nb_Comp_8 60.61227 -130.32236880 0.0975 -1.3625575 15.68815 6.614773 #> Nb_Comp_9 62.25948 -462.81358782 0.0975 -2.5318704 23.36252 6.544432 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof #> Nb_Comp_0 NA 96.63448 NA NA NA NA NA #> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA #> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA #> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA #> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA #> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA #> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA #> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA #> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA #> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA #> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749 #> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656 #> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843 #> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035 #> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498 #> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119 #> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873 #> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679 #> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403 #> attr(,"computed_nt") #> [1] 9 #> #> [[2]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.69250 3.463809e-01 0.0975 0.3463809 13.59538 11.099368 #> Nb_Comp_2 58.35228 8.500069e-02 0.0975 -0.3998968 15.53797 8.885823 #> Nb_Comp_3 56.36553 -9.976388e-01 0.0975 -1.1832134 19.39965 7.874634 #> Nb_Comp_4 54.02416 -1.848667e+00 0.0975 -0.4260169 11.22936 6.903925 #> Nb_Comp_5 55.80450 -4.105698e+00 0.0975 -0.7923116 12.37398 6.858120 #> Nb_Comp_6 57.45753 -8.243631e+00 0.0975 -0.8104539 12.41631 6.786392 #> Nb_Comp_7 58.73951 -3.229306e+01 0.0975 -2.6017292 24.44274 6.640327 #> Nb_Comp_8 60.61227 -3.483847e+03 0.0975 -103.6718915 695.05559 6.614773 #> Nb_Comp_9 62.25948 -3.673683e+05 0.0975 -104.4190450 697.32303 6.544432 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof #> Nb_Comp_0 NA 96.63448 NA NA NA NA NA #> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA #> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA #> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA #> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA #> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA #> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA #> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA #> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA #> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA #> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749 #> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656 #> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843 #> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035 #> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498 #> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119 #> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873 #> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679 #> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403 #> attr(,"computed_nt") #> [1] 9 #> #> [[3]] #> AIC Q2cum_Y LimQ2_Y Q2_Y PRESS_Y RSS_Y #> Nb_Comp_0 82.41888 NA NA NA NA 20.800152 #> Nb_Comp_1 63.69250 3.837847e-01 0.0975 0.3837847 12.81737 11.099368 #> Nb_Comp_2 58.35228 7.359297e-02 0.0975 -0.5033821 16.68659 8.885823 #> Nb_Comp_3 56.36553 -8.262912e-01 0.0975 -0.9713702 17.51725 7.874634 #> Nb_Comp_4 54.02416 -2.952771e+00 0.0975 -1.1643705 17.04362 6.903925 #> Nb_Comp_5 55.80450 -1.333758e+01 0.0975 -2.6272237 25.04208 6.858120 #> Nb_Comp_6 57.45753 -7.056600e+01 0.0975 -3.9914969 34.23229 6.786392 #> Nb_Comp_7 58.73951 -1.662936e+02 0.0975 -1.3376134 15.86396 6.640327 #> Nb_Comp_8 60.61227 -3.809729e+02 0.0975 -1.2832479 15.16151 6.614773 #> Nb_Comp_9 62.25948 -1.038634e+03 0.0975 -1.7217480 18.00374 6.544432 #> R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof BIC.dof GMDL.dof #> Nb_Comp_0 NA 96.63448 NA NA NA NA NA #> Nb_Comp_1 0.4663804 77.90810 NA NA NA NA NA #> Nb_Comp_2 0.5728001 72.56787 NA NA NA NA NA #> Nb_Comp_3 0.6214146 70.58113 NA NA NA NA NA #> Nb_Comp_4 0.6680830 68.23976 NA NA NA NA NA #> Nb_Comp_5 0.6702851 70.02009 NA NA NA NA NA #> Nb_Comp_6 0.6737336 71.67313 NA NA NA NA NA #> Nb_Comp_7 0.6807558 72.95511 NA NA NA NA NA #> Nb_Comp_8 0.6819844 74.82787 NA NA NA NA NA #> Nb_Comp_9 0.6853661 76.47507 NA NA NA NA NA #> DoF.naive sigmahat.naive AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 1 0.8062287 0.6697018 0.6991787 -3.605128 #> Nb_Comp_1 2 0.5983679 0.3797438 0.4122175 -11.413749 #> Nb_Comp_2 3 0.5442372 0.3231208 0.3634169 -12.847656 #> Nb_Comp_3 4 0.5210941 0.3044529 0.3537087 -12.776843 #> Nb_Comp_4 5 0.4965569 0.2839276 0.3398355 -12.891035 #> Nb_Comp_5 6 0.5039885 0.3001871 0.3692997 -11.349498 #> Nb_Comp_6 7 0.5108963 0.3163819 0.3992388 -9.922119 #> Nb_Comp_7 8 0.5153766 0.3300041 0.4263658 -8.696873 #> Nb_Comp_8 9 0.5249910 0.3507834 0.4632727 -7.337679 #> Nb_Comp_9 10 0.5334234 0.3707649 0.4998004 -6.033403 #> attr(,"computed_nt") #> [1] 9 #> #> attr(,"class") #> [1] "summary.cv.plsRmodel"data(aze_compl) summary(cv.plsR(y~.,data=aze_compl,nt=10,K=8,NK=3, verbose=FALSE),MClassed=TRUE,verbose=FALSE)#> [[1]] #> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y #> Nb_Comp_0 154.6179 49 NA NA NA #> Nb_Comp_1 126.4083 27 45 -0.09807511 0.0975 #> Nb_Comp_2 119.3375 25 53 -0.69629366 0.0975 #> Nb_Comp_3 114.2313 27 46 -2.15584036 0.0975 #> Nb_Comp_4 112.3463 23 43 -5.66282796 0.0975 #> Nb_Comp_5 113.2362 22 41 -13.76390693 0.0975 #> Nb_Comp_6 114.7620 21 39 -32.24434771 0.0975 #> Nb_Comp_7 116.5264 20 39 -74.36539708 0.0975 #> Nb_Comp_8 118.4601 20 41 -170.43829999 0.0975 #> Nb_Comp_9 120.4452 19 41 -388.61593231 0.0975 #> Nb_Comp_10 122.4395 19 41 -884.58342556 0.0975 #> Q2_Y PRESS_Y RSS_Y R2_Y AIC.std DoF.dof #> Nb_Comp_0 NA NA 25.91346 NA 298.1344 1.00000 #> Nb_Comp_1 -0.09807511 28.45493 19.38086 0.2520929 269.9248 22.55372 #> Nb_Comp_2 -0.54478837 29.93933 17.76209 0.3145613 262.8540 27.31542 #> Nb_Comp_3 -0.86043280 33.04517 16.58896 0.3598323 257.7478 30.52370 #> Nb_Comp_4 -1.11126901 35.02376 15.98071 0.3833049 255.8628 34.00000 #> Nb_Comp_5 -1.21586194 35.41104 15.81104 0.3898523 256.7527 34.00000 #> Nb_Comp_6 -1.25173105 35.60221 15.73910 0.3926285 258.2785 34.00000 #> Nb_Comp_7 -1.26701386 35.68076 15.70350 0.3940024 260.0429 33.71066 #> Nb_Comp_8 -1.27476145 35.72171 15.69348 0.3943888 261.9766 34.00000 #> Nb_Comp_9 -1.27263063 35.66549 15.69123 0.3944758 263.9617 33.87284 #> Nb_Comp_10 -1.27296512 35.66562 15.69037 0.3945088 265.9560 34.00000 #> sigmahat.dof AIC.dof BIC.dof GMDL.dof DoF.naive sigmahat.naive #> Nb_Comp_0 0.5015845 0.2540061 0.2604032 -67.17645 1 0.5015845 #> Nb_Comp_1 0.4848429 0.2883114 0.4231184 -53.56607 2 0.4358996 #> Nb_Comp_2 0.4781670 0.2908950 0.4496983 -52.42272 3 0.4193593 #> Nb_Comp_3 0.4719550 0.2902572 0.4631316 -51.93343 4 0.4072955 #> Nb_Comp_4 0.4744263 0.3008285 0.4954133 -50.37079 5 0.4017727 #> Nb_Comp_5 0.4719012 0.2976347 0.4901536 -50.65724 6 0.4016679 #> Nb_Comp_6 0.4708264 0.2962804 0.4879234 -50.78005 7 0.4028135 #> Nb_Comp_7 0.4693382 0.2937976 0.4826103 -51.05525 8 0.4044479 #> Nb_Comp_8 0.4701436 0.2954217 0.4865092 -50.85833 9 0.4064413 #> Nb_Comp_9 0.4696894 0.2945815 0.4845867 -50.95616 10 0.4085682 #> Nb_Comp_10 0.4700970 0.2953632 0.4864128 -50.86368 11 0.4107477 #> AIC.naive BIC.naive GMDL.naive #> Nb_Comp_0 0.2540061 0.2604032 -67.17645 #> Nb_Comp_1 0.1936625 0.2033251 -79.67755 #> Nb_Comp_2 0.1809352 0.1943501 -81.93501 #> Nb_Comp_3 0.1722700 0.1891422 -83.31503 #> Nb_Comp_4 0.1691819 0.1897041 -83.23369 #> Nb_Comp_5 0.1706451 0.1952588 -81.93513 #> Nb_Comp_6 0.1731800 0.2020601 -80.42345 #> Nb_Comp_7 0.1761610 0.2094352 -78.87607 #> Nb_Comp_8 0.1794902 0.2172936 -77.31942 #> Nb_Comp_9 0.1829787 0.2254232 -75.80069 #> Nb_Comp_10 0.1865584 0.2337468 -74.33325 #> attr(,"computed_nt") #> [1] 10 #> #> [[2]] #> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y #> Nb_Comp_0 154.6179 49 NA NA NA NA #> Nb_Comp_1 126.4083 27 46 -0.1665311 0.0975 -0.1665311 #> Nb_Comp_2 119.3375 25 53 -0.8447623 0.0975 -0.5814085 #> Nb_Comp_3 114.2313 27 46 -2.4669664 0.0975 -0.8793567 #> Nb_Comp_4 112.3463 23 48 -6.7118845 0.0975 -1.2243898 #> Nb_Comp_5 113.2362 22 47 -16.9681124 0.0975 -1.3299250 #> Nb_Comp_6 114.7620 21 46 -42.2260383 0.0975 -1.4057084 #> Nb_Comp_7 116.5264 20 46 -104.7676681 0.0975 -1.4468508 #> Nb_Comp_8 118.4601 20 48 -259.3463269 0.0975 -1.4614925 #> Nb_Comp_9 120.4452 19 49 -641.1264847 0.0975 -1.4664319 #> Nb_Comp_10 122.4395 19 49 -1580.3337088 0.0975 -1.4626514 #> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof #> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061 #> Nb_Comp_1 30.22886 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114 #> Nb_Comp_2 30.64906 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950 #> Nb_Comp_3 33.38130 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572 #> Nb_Comp_4 36.90032 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285 #> Nb_Comp_5 37.23384 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347 #> Nb_Comp_6 38.03675 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804 #> Nb_Comp_7 38.51123 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976 #> Nb_Comp_8 38.65404 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217 #> Nb_Comp_9 38.70690 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815 #> Nb_Comp_10 38.64203 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632 #> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive #> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032 #> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251 #> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501 #> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422 #> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041 #> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588 #> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601 #> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352 #> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936 #> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232 #> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468 #> GMDL.naive #> Nb_Comp_0 -67.17645 #> Nb_Comp_1 -79.67755 #> Nb_Comp_2 -81.93501 #> Nb_Comp_3 -83.31503 #> Nb_Comp_4 -83.23369 #> Nb_Comp_5 -81.93513 #> Nb_Comp_6 -80.42345 #> Nb_Comp_7 -78.87607 #> Nb_Comp_8 -77.31942 #> Nb_Comp_9 -75.80069 #> Nb_Comp_10 -74.33325 #> attr(,"computed_nt") #> [1] 10 #> #> [[3]] #> AIC MissClassed CV_MissClassed Q2cum_Y LimQ2_Y Q2_Y #> Nb_Comp_0 154.6179 49 NA NA NA NA #> Nb_Comp_1 126.4083 27 51 -0.1958246 0.0975 -0.1958246 #> Nb_Comp_2 119.3375 25 51 -0.8933818 0.0975 -0.5833274 #> Nb_Comp_3 114.2313 27 48 -2.7197247 0.0975 -0.9645930 #> Nb_Comp_4 112.3463 23 49 -7.6463722 0.0975 -1.3244657 #> Nb_Comp_5 113.2362 22 48 -20.8559807 0.0975 -1.5277631 #> Nb_Comp_6 114.7620 21 50 -55.7688361 0.0975 -1.5974051 #> Nb_Comp_7 116.5264 20 49 -147.3906228 0.0975 -1.6139451 #> Nb_Comp_8 118.4601 20 51 -390.2551359 0.0975 -1.6366567 #> Nb_Comp_9 120.4452 19 51 -1033.0680149 0.0975 -1.6429506 #> Nb_Comp_10 122.4395 19 51 -2736.1990844 0.0975 -1.6470204 #> PRESS_Y RSS_Y R2_Y AIC.std DoF.dof sigmahat.dof AIC.dof #> Nb_Comp_0 NA 25.91346 NA 298.1344 1.00000 0.5015845 0.2540061 #> Nb_Comp_1 30.98795 19.38086 0.2520929 269.9248 22.55372 0.4848429 0.2883114 #> Nb_Comp_2 30.68625 17.76209 0.3145613 262.8540 27.31542 0.4781670 0.2908950 #> Nb_Comp_3 34.89527 16.58896 0.3598323 257.7478 30.52370 0.4719550 0.2902572 #> Nb_Comp_4 38.56047 15.98071 0.3833049 255.8628 34.00000 0.4744263 0.3008285 #> Nb_Comp_5 40.39544 15.81104 0.3898523 256.7527 34.00000 0.4719012 0.2976347 #> Nb_Comp_6 41.06768 15.73910 0.3926285 258.2785 34.00000 0.4708264 0.2962804 #> Nb_Comp_7 41.14114 15.70350 0.3940024 260.0429 33.71066 0.4693382 0.2937976 #> Nb_Comp_8 41.40473 15.69348 0.3943888 261.9766 34.00000 0.4701436 0.2954217 #> Nb_Comp_9 41.47710 15.69123 0.3944758 263.9617 33.87284 0.4696894 0.2945815 #> Nb_Comp_10 41.53500 15.69037 0.3945088 265.9560 34.00000 0.4700970 0.2953632 #> BIC.dof GMDL.dof DoF.naive sigmahat.naive AIC.naive BIC.naive #> Nb_Comp_0 0.2604032 -67.17645 1 0.5015845 0.2540061 0.2604032 #> Nb_Comp_1 0.4231184 -53.56607 2 0.4358996 0.1936625 0.2033251 #> Nb_Comp_2 0.4496983 -52.42272 3 0.4193593 0.1809352 0.1943501 #> Nb_Comp_3 0.4631316 -51.93343 4 0.4072955 0.1722700 0.1891422 #> Nb_Comp_4 0.4954133 -50.37079 5 0.4017727 0.1691819 0.1897041 #> Nb_Comp_5 0.4901536 -50.65724 6 0.4016679 0.1706451 0.1952588 #> Nb_Comp_6 0.4879234 -50.78005 7 0.4028135 0.1731800 0.2020601 #> Nb_Comp_7 0.4826103 -51.05525 8 0.4044479 0.1761610 0.2094352 #> Nb_Comp_8 0.4865092 -50.85833 9 0.4064413 0.1794902 0.2172936 #> Nb_Comp_9 0.4845867 -50.95616 10 0.4085682 0.1829787 0.2254232 #> Nb_Comp_10 0.4864128 -50.86368 11 0.4107477 0.1865584 0.2337468 #> GMDL.naive #> Nb_Comp_0 -67.17645 #> Nb_Comp_1 -79.67755 #> Nb_Comp_2 -81.93501 #> Nb_Comp_3 -83.31503 #> Nb_Comp_4 -83.23369 #> Nb_Comp_5 -81.93513 #> Nb_Comp_6 -80.42345 #> Nb_Comp_7 -78.87607 #> Nb_Comp_8 -77.31942 #> Nb_Comp_9 -75.80069 #> Nb_Comp_10 -74.33325 #> attr(,"computed_nt") #> [1] 10 #> #> attr(,"class") #> [1] "summary.cv.plsRmodel"# }