Package index
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EPSGO() - Efficient Parameter Selection via Global Optimization
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PLL(<coxnet>) - Predictive partial log-likelihood for glmnet Cox PH model fit
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Plot.coef.glmnet() - function to highlight the path of a pre-specified set of variables within the coefficient path
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Plot.peperr.curves() - Plot method for prediction error curves of a peperr object
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aggregation.auc() - Determine the area under the ROC curve for a fitted model
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balancedFolds() - Function producing stratified/ balanced folds for cross validation
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coef(<sum.intsearch>) - Get coefficients for a model
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complexity.glmnet() - Interface for determination of penalty lambda in penalized regression model via cross-validation
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fit.glmnet() - Interface function for fitting a penalized regression model with
glmnet
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plot(<stabpath>) - function to plot a stability path
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plot(<sum.intsearch>) - Plot Summary object for interval search models
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predictProb(<coxnet>) - Extract predicted survival probabilities from a glmnet fit
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stabpath() - Stability path for glmnet models
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stabsel() - function to estimate a stable set of variables
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summary(<intsearch>) - Summary method for interval search models
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tune.glmnet.interval() - Wrapper function for
glmnetobjects.